Egypt, Senegal, South Africa and Nigeria are the only other African countries hosting NBA offices.
The English Premier League needed 14 out of 20 clubs to vote for the ban at a shareholders' meeting.
Kenyan skipper Michael Olunga scored twice in the first half.
The Portuguese coach has been singled out for criticism for the Super Eagles' slow start to World Cup qualification.
The punishment, the biggest sporting sanction in the competition's history, leaves Everton 19th in the table.
